An R package estimates the correlations of orthologs and transposable elements between two species


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Documentation for package ‘TEKRABber’ version 1.0.1

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appTEKRABber Visualize TEKRABber results with shiny app
assay_tekcorrset Access genes and transposable elements expression data
corrOrthologTE Estimate correlation comparing orthologs and TEs
ctCorr Normalized Gene/TE expression toy data in control and treatment in same species for correlation analysis
ctInputDE Input expression data of gene/TE for differentially expressed analysis within same species
DECorrInputs Generate all the input files for TEKRABber downstream analysis
DEgeneTE Estimate differentially expressed genes and TEs
fetchDataHmChimp Orthology information of human and chimpanzee with scaling factor
orthologScale Get orthology information from Ensembl
rcpp_corr Estimate the correlation between genes and transposable elements
speciesCorr A subsets of normalized Gene/TE expression data from human/chimpanzee brain RNA-seq for correlation analysis demonstration
speciesCounts Gene/TE expression data from human/chimpanzee brain RNA-seq
TEKRABber An R package estimates the correlations of orthologs and transposable elements between two species