appTEKRABber |
Visualize TEKRABber results with shiny app |
assay_tekcorrset |
Access genes and transposable elements expression data |
corrOrthologTE |
Estimate correlation comparing orthologs and TEs |
ctCorr |
Normalized Gene/TE expression toy data in control and treatment in same species for correlation analysis |
ctInputDE |
Input expression data of gene/TE for differentially expressed analysis within same species |
DECorrInputs |
Generate all the input files for TEKRABber downstream analysis |
DEgeneTE |
Estimate differentially expressed genes and TEs |
fetchDataHmChimp |
Orthology information of human and chimpanzee with scaling factor |
orthologScale |
Get orthology information from Ensembl |
rcpp_corr |
Estimate the correlation between genes and transposable elements |
speciesCorr |
A subsets of normalized Gene/TE expression data from human/chimpanzee brain RNA-seq for correlation analysis demonstration |
speciesCounts |
Gene/TE expression data from human/chimpanzee brain RNA-seq |
TEKRABber |
An R package estimates the correlations of orthologs and transposable elements between two species |