Network Seriation And Modularization


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Documentation for package ‘NetSAM’ version 1.36.0

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NetSAM-package Network Seriation and Modularization
consensusNet Construction of a consensus coexpression network
featureAssociation Calculate the associations between modules and sample features
GOAssociation Identify the associated GO terms for each module
mapToSymbol Map other ids to gene symbols
MatNet Construction of correlation network from a matrix
MatSAM Correlation network construction, seriation and modularization from a matrix
mergeDuplicate Merge the duplicate Ids in the matrix data
NetAnalyzer Network analyzer
NetSAM Network Seriation and Modularization
netsam_output An example of the list object returned by NetSAM function
testFileFormat Test whether the data matrix and the annotation have a correct format