AHPubMedDbs

DOI: 10.18129/B9.bioc.AHPubMedDbs    

This is the development version of AHPubMedDbs; for the stable release version, see AHPubMedDbs.

SQLites, tibbles, and data.tables for AnnotationHub

Bioconductor version: Development (3.14)

Supplies AnnotationHub with some preprocessed sqlite, tibble, and data.table datasets of PubMed. All the datasets are generated by our Snakemake workflow [pubmed-workflow](https://github.com/rikenbit/pubmed-workflow). For the details, see the README.md of pubmed-workflow.

Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("AHPubMedDbs")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AHPubMedDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHPubMedDbs")

 

HTML R Script Provide PubMed datasets for AnnotationHub
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, AnnotationHub
Version 0.99.8
License Artistic-2.0
Depends R (>= 4.1.0)
Imports AnnotationHub(>= 2.22.0)
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/rikenbit/AHPubMedDbs/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHPubMedDbs_0.99.8.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/AHPubMedDbs/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: