Changes in version 1.5.7 - Add TreatmentResponseExperiment class, a simple wrapper around LongTable to make the class syntax more domain specific - Add CoreSet2 structure to support creation of CoreSets with the modified class structure introducted in BioC 3.13 - CoreSets can now be made with treatment combination experiments via the TreatmentResponseExperiment class! Changes in version 1.5.6 - Fix bug in LongTable -> data.table coerce method that was causing rows of some assays to be dropped (closes issue #) Changes in version 1.5.5 - Fix bug in .distancePointLine where function fails with no intercept specified (Issue #120) - Added support for aggregating an assay inside of a LongTable class object - Some in-progress updates to the CoreSet constructor which will be completed for the Fall release - Fixed an error in treatmentNames example - Fixed roxygen2 documentation warnings about S4 method documentation - Overhauled LongTable coerce methods to use the LongTableDataMapper class instead of the deprecated 'LongTable.config' attribute Changes in version 1.5.4 - Fix bug in $<- and [[<- methods where value was returned instead of updated object - Fix bug in .sanitize input caused by length > 1 coercing to logical vector Changes in version 1.5.3 - Fix bug in connectivityScore caused by length > 1 coercing to logical vector; this should fix errors in RadioGx and PharmacoGx vignettes that were caused by failed R CMD build Changes in version 1.5.2 - Add subsetBySample method for CoreSet object; this is the first step in modularizing the subset methods for reuse in dependent packages - Added a CoreSet-utils documentation section to document subset, intersect, combine and other set operations for a CoreSet object. Changes in version 1.5.1 - Fixed some spelling errors and incorrect code chunk configurations in the LongTable vignette - Fix bug in .rebuildProfiles where the function fails if replicate_id is assigned as a rowID column in the LongTable in @sensitivity Changes in version 1.5.0 - Bioconductor spring 2021 release - Added the DataMapper abstract class - Added the LongTableDataMapper concrete class - Added the metaConstruct method, for making an S4 object from a sub-class of DataMapper - Updated LongTable vignette with documentation for the DataMapper and LongTableDataMapper - Refactored various methods to work with a LongTable in @sensititivty - Refactored various methods to work with a MultiAssayExperiment in @molecularProfiles Changes in version 1.1.5 - Implemented a new class, the LongTable, to store the results of a treatment response experiment. This class provides a flexible and fast data storage object which can be subclassed for use in other R packages. - Added vignette documenting LongTable accessors and usage of the new object. Changes in version 1.0.2 - Bug fix: suppress warnings thrown by piano::runGSA inside the connectivitScore function Changes in version 1.0.1 - Updated the CoreGx vignette to include more information on extending the CoreSet class for use in other treatment-response experiments. Changes in version 1.0.0 - Implemented molecularProfiles as SummarizedExperiments instead of ExpressionSets - Modifying generic implementation to add ...; allows for additional arguments in setMethods() for CoreGx generics - Removing package from CRAN - Submitting package to Bioconductor