sigsquared

DOI: 10.18129/B9.bioc.sigsquared    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see sigsquared.

Gene signature generation for functionally validated signaling pathways

Bioconductor version: 3.14

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

Author: UnJin Lee

Maintainer: UnJin Lee <unjin at uchicago.edu>

Citation (from within R, enter citation("sigsquared")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigsquared")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigsquared")

 

PDF R Script SigSquared
PDF   Reference Manual

Details

biocViews Software
Version 1.26.0
In Bioconductor since BioC 3.1 (R-3.2) (7 years)
License GPL version 3
Depends R (>= 3.2.0), methods
Imports Biobase, survival
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigsquared_1.26.0.tar.gz
Windows Binary sigsquared_1.26.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) sigsquared_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sigsquared
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigsquared
Package Short Url https://bioconductor.org/packages/sigsquared/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: