DOI: 10.18129/B9.bioc.mirTarRnaSeq    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see mirTarRnaSeq.


Bioconductor version: 3.14

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Author: Mercedeh Movassagh [aut, cre] , Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]

Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>

Citation (from within R, enter citation("mirTarRnaSeq")):


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PDF R Script mirTarRnaSeq
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (1 year)
License MIT
Depends R (>= 4.1.0)
Imports purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils
Suggests BiocStyle, knitr, rmarkdown, R.cache
Depends On Me
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Source Package mirTarRnaSeq_1.2.0.tar.gz
Windows Binary mirTarRnaSeq_1.2.0.zip
macOS 10.13 (High Sierra) mirTarRnaSeq_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mirTarRnaSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mirTarRnaSeq
Package Short Url https://bioconductor.org/packages/mirTarRnaSeq/
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