affyPara

DOI: 10.18129/B9.bioc.affyPara    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyPara.

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Bioconductor version: 3.14

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyPara")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software
Version	1.54.0
In Bioconductor since	BioC 2.2 (R-2.7) (14 years)
License	GPL-3
Depends	R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio
Imports
LinkingTo
Suggests	affydata
SystemRequirements
Enhances	affy
URL	http://www.ibe.med.uni-muenchen.de
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/affyPara
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyPara
Package Short Url	https://bioconductor.org/packages/affyPara/
Package Downloads Report	Download Stats