PICS

DOI: 10.18129/B9.bioc.PICS    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: 3.14

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

 

HTML R Script The PICS users guide
PDF   Reference Manual

Details

biocViews ChIPseq, Clustering, Sequencing, Software, Visualization
Version 2.38.0
In Bioconductor since BioC 2.6 (R-2.11) (12 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments
LinkingTo
Suggests rtracklayer, parallel, knitr
SystemRequirements
Enhances
URL https://github.com/SRenan/PICS
BugReports https://github.com/SRenan/PICS/issues
Depends On Me
Imports Me PING
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.38.0.tar.gz
Windows Binary PICS_2.38.0.zip
macOS 10.13 (High Sierra) PICS_2.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS
Package Short Url https://bioconductor.org/packages/PICS/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: