DOI: 10.18129/B9.bioc.NanoTube    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see NanoTube.

An Easy Pipeline for NanoString nCounter Data Analysis

Bioconductor version: 3.14

NanoTube includes functions for the processing, quality control, analysis, and visualization of NanoString nCounter data. Analysis functions include differential analysis and gene set analysis methods, as well as postprocessing steps to help understand the results. Additional functions are included to enable interoperability with other Bioconductor NanoString data analysis packages.

Author: Caleb Class [cre, aut]

Maintainer: Caleb Class <cclass at>

Citation (from within R, enter citation("NanoTube")):


To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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Text   NEWS


biocViews DifferentialExpression, GeneExpression, QualityControl, Software
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License GPL-3
Depends R (>= 4.1), Biobase, ggplot2
Imports fgsea, limma, methods, reshape, stats, utils
Suggests grid, kableExtra, knitr, NanoStringDiff, pheatmap, plotly, rlang, rmarkdown, ruv, qusage, shiny, testthat, xlsx
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package NanoTube_1.0.0.tar.gz
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macOS 10.13 (High Sierra) NanoTube_1.0.0.tgz
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