DOI: 10.18129/B9.bioc.MLP    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MLP.

Mean Log P Analysis

Bioconductor version: 3.14

Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.

Author: Nandini Raghavan [aut], Tobias Verbeke [aut], An De Bondt [aut], Javier Cabrera [ctb], Dhammika Amaratunga [ctb], Tine Casneuf [ctb], Willem Ligtenberg [ctb], Laure Cougnaud [cre]

Maintainer: Tobias Verbeke <tobias.verbeke at>

Citation (from within R, enter citation("MLP")):


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biocViews GO, GeneExpression, Genetics, KEGG, Pathways, Reactome, Software
Version 1.42.0
In Bioconductor since BioC 2.8 (R-2.13) (11 years)
License GPL-3
Imports AnnotationDbi, gplots, graphics, stats, utils
Suggests GO.db,,,,, KEGGREST, annotate, Rgraphviz, GOstats, graph, limma, mouse4302.db, reactome.db
Depends On Me
Imports Me esetVis
Suggests Me a4
Links To Me
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