DOI: 10.18129/B9.bioc.DAPAR    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see DAPAR.

Tools for the Differential Analysis of Proteins Abundance with R

Bioconductor version: 3.14

This package contains a collection of functions for the visualisation and the statistical analysis of proteomic data.

Author: Samuel Wieczorek [aut, cre], Florence Combes [aut], Thomas Burger [aut], Vasile-Cosmin Lazar [ctb], Enora Fremy [ctb], Helene Borges [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPAR")):


To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))


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PDF R Script Prostar user manual
PDF   Reference Manual
Text   NEWS


biocViews DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.26.1
In Bioconductor since BioC 3.2 (R-3.2) (6.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports Biobase, MSnbase, tibble, RColorBrewer, stats, preprocessCore, Cairo, png, lattice, reshape2, gplots, pcaMethods, ggplot2, limma, knitr, tmvtnorm, norm, impute, stringr, grDevices, graphics, openxlsx, utils, cp4p (>= 0.3.5), scales, Matrix, vioplot, imp4p (>= 1.1), forcats, methods, DAPARdata(>= 1.24.0), siggenes, graph, lme4, readxl, highcharter, clusterProfiler, dplyr, tidyr, AnnotationDbi, tidyverse, vsn, FactoMineR, factoextra, multcomp, purrr, visNetwork, foreach, parallel, doParallel, igraph, dendextend, Mfuzz, apcluster, diptest, cluster
Suggests BiocGenerics, testthat, BiocStyle
URL http://www.prostar-proteomics.org/
BugReports https://github.com/samWieczorek/DAPAR/issues
Depends On Me
Imports Me Prostar
Suggests Me DAPARdata
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package DAPAR_1.26.1.tar.gz
Windows Binary DAPAR_1.26.1.zip
macOS 10.13 (High Sierra) DAPAR_1.26.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/DAPAR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPAR
Package Short Url https://bioconductor.org/packages/DAPAR/
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