ct.alignmentChart {gCrisprTools} | R Documentation |
This function displays the alignemnt statistics for a pooled Crispr screen, reported directly from an alignment statistic matrix.
ct.alignmentChart(aln, sampleKey = NULL)
aln |
A numeric matrix of alignment statistics for a Crispr experiment. Corresponds to a 4xN matrix of read counts, with columns indicating
samples and rows indicating the number of 'targets', 'nomatch', 'rejections', and 'double_match' reads. Details about these classes may be found
in the best practices vignette or as part of the report generated with |
sampleKey |
An optional ordered factor linking the samples to experimental variables. The |
A grouped barplot displaying the alignment statistics for each sample included in the alignment matrix, which usually corresponds to all of the samples in the experiment.
Russell Bainer
data('aln') ct.alignmentChart(aln)