extract_sets {decoupleR}R Documentation

Extract sets

Description

Extracts feature sets from a renamed network (see rename_net).

Usage

extract_sets(network)

Arguments

network

Tibble or dataframe with edges and it's associated metadata.

Examples

inputs_dir <- system.file("testdata", "inputs", package = "decoupleR")
mat <- readRDS(file.path(inputs_dir, "input-expr_matrix.rds"))
network <- readRDS(file.path(inputs_dir, "input-dorothea_genesets.rds"))
network <- rename_net(network, tf, target, mor, likelihood)
extract_sets(network)

[Package decoupleR version 2.0.1 Index]