run_consensus {decoupleR} | R Documentation |
Function to generate a consensus score between methods from the
result of the decouple
function.
run_consensus(df, include_time = FALSE, seed = NULL)
df |
|
include_time |
Should the time per statistic evaluated be informed? |
seed |
Deprecated parameter. |
Updated tibble with the computed consensus score between methods
inputs_dir <- system.file("testdata", "inputs", package = "decoupleR") mat <- readRDS(file.path(inputs_dir, "input-expr_matrix.rds")) network <- readRDS(file.path(inputs_dir, "input-dorothea_genesets.rds")) results <- decouple( mat = mat, network = network, .source = "tf", .target = "target", statistics = c("wmean", "ulm"), args = list( wmean = list(.mor = "mor", .likelihood = "likelihood"), ulm = list(.mor = "mor", .likelihood = "likelihood") ), consensus_score = FALSE ) run_consensus(results)