Est2Phase {POWSC} | R Documentation |
These parameters include four gene-wise parameters and two cell-wise parameters.
Est2Phase(sce, low.prob = 0.99)
sce |
SingleCellExperiment object with assays(sce)[[1]] is the count matrix or input directly |
low.prob |
lower bound probability for phase I |
a list of needed estimated parameters
data("es_mef_sce") sce = es_mef_sce[, colData(es_mef_sce)$cellTypes == "fibro"] set.seed(123) rix = sample(1:nrow(sce), 500) sce = sce[rix, ] estParas = Est2Phase(sce)