computeLibSizeChrom {NADfinder} | R Documentation |
Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.
computeLibSizeChrom(aln_list)
aln_list |
a list. |
A RangedSummarizedExperiment object with chromosome-level depth The assays slot holds the counts, rowRanges holds the annotation from the sliding widows of genome. metadata contains lib.size.chrom for holding chromosome-level sequence depth
Jun Yu,Hervé Pagès and Julie Zhu