function_run_diffcytDSLMM {CyTOFpower}R Documentation

Run diffcyt-DS-LMM model.

Description

Run diffcyt-DS-LMM model.

Usage

function_run_diffcytDSLMM(ls_form_contrast, df_experiment_info, ls_features)

Arguments

ls_form_contrast

list, with formula and constrat matrix.

df_experiment_info

data.frame, information about the experiment (donor IDs, group IDs and sample IDs).

ls_features

list, with cell counts and medians for each markers.

Details

Function to run diffcyt-DS-LMM model from the diffcyt package.

Value

list with 2 slots: - model_fit: the model fit; - result_summary: results of the model for each marker.


[Package CyTOFpower version 1.0.0 Index]