rawPlot {CAFE}R Documentation

Plot without any smoother

Description

Makes chromosome plot using raw data values

Usage

rawPlot(datalist,samples=c(1,2),chromNum=1,idiogram=FALSE,file="default")

Arguments

datalist

The CAFE datalist to be analyzed, i.e. the output of ProcessCels.

samples

A vector or sample numbers to be plotted

chromNum

The chromosome to be analyzed

idiogram

If TRUE, will plot a chromosome idiogram over the plot

file

Specify a file name to store output png file

Value

Plot to file system; Returns a ggplot2 graph if chromNum!="ALL". When chromNum=="ALL", returns a list of ggplot2 graphs.

Author(s)

Sander Bollen

See Also

slidPlot facetPlot discontPlot

Examples

data("CAFE_data")
rawPlot(CAFE_data,samples=8,chromNum=17)

[Package CAFE version 1.30.0 Index]