computeMsigNetwork {vissE} | R Documentation |
Computes an igraph object using information on gene sets and gene sets
computed using the computeMsigOverlap()
function.
computeMsigNetwork(genesetOverlap, msigGsc)
genesetOverlap |
a data.frame, containing results of an overlap analysis
computed using the |
msigGsc |
a GeneSetCollection object, containing gene sets used to compute overlap. |
an igraph object
data(hgsc) ovlap <- computeMsigOverlap(hgsc) ig <- computeMsigNetwork(ovlap, hgsc)