as.data.frame.varPartResults {variancePartition}R Documentation

Convert to data.frame

Description

Convert varPartResults to data.frame

Usage

## S3 method for class 'varPartResults'
as.data.frame(x, row.names = NULL, optional = FALSE, ...)

Arguments

x

varPartResults

row.names

pass thru to generic

optional

pass thru to generic

...

other arguments.

Value

data.frame

Examples

# load library
# library(variancePartition)

# load simulated data:
# geneExpr: matrix of gene expression values
# info: information/metadata about each sample
data(varPartData)

# Specify variables to consider
# Age is continuous so we model it as a fixed effect
# Individual and Tissue are both categorical, so we model them as random effects
form <- ~ Age + (1|Individual) + (1|Tissue) 

# Fit model
varPart <- fitExtractVarPartModel( geneExpr[1:5,], form, info )

# convert to matrix
as.data.frame(varPart)


[Package variancePartition version 1.23.3 Index]