plateSummary {twoddpcr} | R Documentation |
Takes a collection of classified droplets, each corresponding to a well, and produces a list of positive/negative counts and estimates of how many molecules are in each well.
plateSummary( wells, ..., ch1Label = "Mt", ch2Label = "Wt", sortByLetter = FALSE ) ## S4 method for signature 'list' plateSummary(wells, ch1Label = "Mt", ch2Label = "Wt", sortByLetter = FALSE) ## S4 method for signature 'ddpcrPlate' plateSummary( wells, cMethod, ch1Label = "Mt", ch2Label = "Wt", sortByLetter = FALSE )
wells |
Either a |
... |
Other options depending on the type of |
ch1Label |
The prefix to use for the channel 1 target. Defaults to "Mt". |
ch2Label |
The prefix to use for the channel 2 target. Defaults to "Wt". |
sortByLetter |
If |
cMethod |
The classification method to create a summary for. |
A data frame with droplet counts and molecules number estimates for each well.
Anthony Chiu, anthony.chiu@cruk.manchester.ac.uk
## Take a ddpcrPlate object and summarise its wells. krasPlate <- ddpcrPlate(KRASdata) plateSummary(krasPlate, cMethod="Cluster")