read.hyphy.seq {treeio}R Documentation

read.hyphy.seq

Description

parse sequences from hyphy output

Usage

read.hyphy.seq(file)

Arguments

file

output of hyphy ancestral sequence inference; nexus format

Value

DNAbin object

Author(s)

Guangchuang Yu

Examples

ancseq <- system.file("extdata/HYPHY", "ancseq.nex", package="treeio")
read.hyphy.seq(ancseq)

[Package treeio version 1.18.0 Index]