read.treeqza {treeio} | R Documentation |
read.treeqza
read.treeqza(treeqza, node.label = "label", ...)
treeqza |
the qiime2 output file contained tree file. |
node.label |
parse node label as 'label' or 'support' value. |
... |
additional parameter, passed to 'read.tree'. |
phylo tree object or treedata object when node.label was parsed 'support'.
qzafile1 <- system.file("extdata/qiime2treeqza", "fasttree-tree.qza", package="treeio") qzafile2 <- system.file("extdata/qiime2treeqza", "iqt-tree.qza", package="treeio") qzafile3 <- system.file("extdata/qiime2treeqza", "raxml-cat-tree.qza", package="treeio") tr1 <- read.treeqza(qzafile1) tr1 tr2 <- read.treeqza(qzafile2) tr2 tr3 <- read.treeqza(qzafile3) tr3 # parse node label as 'support' value. qzafile4 <- system.file("extdata/qiime2treeqza", "raxml-cat-bootstrap-tree.qza", package="treeio") tr4 <- read.treeqza(qzafile4, node.label="support") tr4