SpectrumScore-class {transite} | R Documentation |
An S4 class to represent a scored spectrum
Getter Method get_adj_r_squared
Getter Method get_model_degree
Getter Method get_model_residuals
Getter Method get_model_slope
Getter Method get_model_f_statistic
Getter Method get_model_f_statistic_p_value
Getter Method get_consistency_score
Getter Method get_consistency_score_p_value
Getter Method get_consistency_score_n
get_adj_r_squared(object) ## S4 method for signature 'SpectrumScore' get_adj_r_squared(object) get_model_degree(object) ## S4 method for signature 'SpectrumScore' get_model_degree(object) get_model_residuals(object) ## S4 method for signature 'SpectrumScore' get_model_residuals(object) get_model_slope(object) ## S4 method for signature 'SpectrumScore' get_model_slope(object) get_model_f_statistic(object) ## S4 method for signature 'SpectrumScore' get_model_f_statistic(object) get_model_f_statistic_p_value(object) ## S4 method for signature 'SpectrumScore' get_model_f_statistic_p_value(object) get_consistency_score(object) ## S4 method for signature 'SpectrumScore' get_consistency_score(object) get_consistency_score_p_value(object) ## S4 method for signature 'SpectrumScore' get_consistency_score_p_value(object) get_consistency_score_n(object) ## S4 method for signature 'SpectrumScore' get_consistency_score_n(object) ## S4 method for signature 'SpectrumScore' show(object) ## S4 method for signature 'SpectrumScore,ANY' plot(x)
object |
SpectrumScore object |
x |
SpectrumScore object |
Object of type SpectrumScore
adj_r_squared
adjusted R^2 of polynomial model
degree
degree of polynomial (integer between 0 and 5)
residuals
residuals of the polynomial model
slope
coefficient of the linear term of the polynomial model (spectrum "direction")
f_statistic
F statistic from the F test used to determine the degree of the polynomial model
f_statistic_p_value
p-value associated with the F statistic
consistency_score
raw local consistency score of the spectrum
consistency_score_p_value
p-value associated with the local consistency score
consistency_score_n
number of permutations performed to calculate p-value of local consistency score (permutations performed before early stopping criterion reached)
plot
spectrum plot
new("SpectrumScore", adj_r_squared = 0, degree = 0L, residuals = 0, slope = 0, f_statistic = 0, f_statistic_p_value = 1, consistency_score = 1, consistency_score_p_value = 1, consistency_score_n = 1000L, plot = NULL )