createTngFusionMethFiles {topdownr} | R Documentation |
The functions runXmlMethodChanger
and runScanHeadsman
call
XmlMethodChanger.exe
and ScanHeadsman.exe
with the corresponding arguments.
The only work on Windows (maybe on Linux + wine as well but that was never
tested).
createTngFusionMethFiles( template, xml = list.files(pattern = ".*\\.xml$"), executable = "XmlMethodChanger.exe", verbose = interactive() ) runXmlMethodChanger( template, xml = list.files(pattern = ".*\\.xml$"), executable = "XmlMethodChanger.exe", verbose = interactive() ) runScanHeadsman(path = ".", executable = "ScanHeadsman.exe")
template |
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xml |
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executable |
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verbose |
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path |
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runXmlMethodChanger
applies ‘XmlMethodChanger.exe’ on all given XML files
generated with writeMethodXmls()
to create .meth
files from a template.
runScanHeadsman
calls ScanHeadsman.exe
on a given directory containing .raw
files.
ScanHeadsman.exe
extracts the method and scan header data
into .experiments.csv
and .txt
files, respectively.
Nothing. Used for its side effects.
XmlMethodChanger source code: https://github.com/thermofisherlsms/meth-modifications/
ScanHeadsman source code: https://bitbucket.org/caetera/scanheadsman
## Not run: runXmlMethodChanger(templateMeth="TMS2IndependentTemplate240Extended.meth", modificationXml=list.files(pattern="^method.*\\.xml$"), executable="..\\XmlMethodChanger.exe") ## End(Not run) ## Not run: runScanHeadsman("raw", executable="..\\ScanHeadsman.exe") ## End(Not run)