fill_NA_using_formula {tidybulk}R Documentation

This function is needed for DE in case the matrix is not rectangular, but includes NA

Description

This function is needed for DE in case the matrix is not rectangular, but includes NA

Usage

fill_NA_using_formula(
  .data,
  .formula,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL,
  .abundance_scaled = NULL
)

Arguments

.data

A tibble

.formula

a formula with no response variable, of the kind ~ factor_of_interest + batch

.sample

The name of the sample column

.transcript

The name of the transcript/gene column

.abundance

The name of the transcript/gene abundance column

.abundance_scaled

The name of the transcript/gene scaled abundance column

Value

A tibble with adjusted counts


[Package tidybulk version 1.5.0 Index]