keep_variable_transcripts_SE {tidybulk} | R Documentation |
Identify variable genes for dimensionality reduction
keep_variable_transcripts_SE(.data, top = 500, log_transform = TRUE)
.data |
A tibble |
top |
An integer. How many top genes to select |
log_transform |
A boolean, whether the value should be log-transformed (e.g., TRUE for RNA sequencing data) |
.sample |
A character name of the sample column |
.transcript |
A character name of the transcript/gene column |
.abundance |
A character name of the read count column |
A tibble filtered genes