as_SummarizedExperiment {tidybulk} | R Documentation |
as_SummarizedExperiment() creates a 'SummarizedExperiment' object from a 'tbl' or 'tidybulk' tbl formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |
as_SummarizedExperiment( .data, .sample = NULL, .transcript = NULL, .abundance = NULL ) ## S4 method for signature 'spec_tbl_df' as_SummarizedExperiment( .data, .sample = NULL, .transcript = NULL, .abundance = NULL ) ## S4 method for signature 'tbl_df' as_SummarizedExperiment( .data, .sample = NULL, .transcript = NULL, .abundance = NULL ) ## S4 method for signature 'tidybulk' as_SummarizedExperiment( .data, .sample = NULL, .transcript = NULL, .abundance = NULL )
.data |
A tibble |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
A 'SummarizedExperiment' object
A 'SummarizedExperiment' object
A 'SummarizedExperiment' object
A 'SummarizedExperiment' object