pivot_sample {tidybulk}R Documentation

Extract sample-wise information

Description

pivot_sample() takes as input a 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | and returns a 'tbl' with only sample-related columns

Usage

pivot_sample(.data, .sample = NULL)

## S4 method for signature 'spec_tbl_df'
pivot_sample(.data, .sample = NULL)

## S4 method for signature 'tbl_df'
pivot_sample(.data, .sample = NULL)

## S4 method for signature 'tidybulk'
pivot_sample(.data, .sample = NULL)

## S4 method for signature 'SummarizedExperiment'
pivot_sample(.data, .sample = NULL)

## S4 method for signature 'RangedSummarizedExperiment'
pivot_sample(.data, .sample = NULL)

Arguments

.data

A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

.sample

The name of the sample column

Details

'r lifecycle::badge("maturing")'

This functon extracts only sample-related information for downstream analysis (e.g., visualisation). It is disruptive in the sense that it cannot be passed anymore to tidybulk function.

Value

A 'tbl' object

A 'tbl' object

A 'tbl' object

A 'tbl' object

A 'tbl' object

A 'tbl' object

Examples



	pivot_sample(tidybulk::se_mini )



[Package tidybulk version 1.5.0 Index]