direct_targets {target}R Documentation

Predict direct targets

Description

This function selects overlapping peaks and regions, calculates the distance between them, score each peak and region and calculate rank products of the regions.

Usage

direct_targets(peaks, regions, regions_col, stats_col, base = 1e+05)

Arguments

peaks

A GRanges object

regions

A GRanges object

regions_col

A character string

stats_col

A character string

base

An integer to calculate distances relative to.

Value

A GRanges object. A similar object to regions with several added metadata columns.

Examples

# load peaks and transcripts data
data("real_peaks")
data("real_transcripts")

# direct targets
dt <- direct_targets(real_peaks, real_transcripts, 'name2', 't')


[Package target version 1.7.0 Index]