moduleload {systemPipeR} | R Documentation |
The function module
enables use of the Environment Modules system
(http://modules.sourceforge.net/) from within the R environment. By default
the user's login shell environment (ie. bash -l
) will be used to
initialize the current session. The module function can also; load or unload
specific software, list all the loaded software within the current session, and
list all the applications available for loading from the module system.
Lastly, the module function can remove all loaded software from the current
session.
module(action_type, module_name="") moduleload(module_name) moduleUnload(module_name) modulelist() moduleAvail() moduleClear() moduleInit()
action_type |
Name of the action to be executed as character vector. The following switches are accepted: |
module_name |
Name of software to load as character vector. |
Tyler Backman, Jordan Hayes and Thomas Girke
## Not run: ## List all available software from the module system avail <- moduleAvail() ## List loaded software in the current session modulelist() ## Example for loading a software into the shell environment moduleload("hisat2") moduleload(modules(args)) ## Example for removing software from the shell environment moduleUnload("hisat2") ## Clear all of the software from the shell's initialization files moduleClear() ## List and load all the software loaded in users default login shell into the current session (default) moduleInit() ## End(Not run)