.scoreByTranscripts {svaRetro} | R Documentation |
Ranking matching transcripts
.scoreByTranscripts(genes, transcripts.col)
genes |
TxDb object of genes. hg19 and hg38 are supported in the current version. |
transcripts.col |
A vector of transcript names. |
This is an internal function which returns overlapping transcript names with ranking scores. The ranking score is the proportion of exon-exon fusions (intronic deletion events) detected for a given transcript.
A dataframe with two columns, tx_name and score.