plsda_vip_plot {structToolbox}R Documentation

PLSDA VIP plot

Description

A plot of the Variable Importance for Projection (VIP) scores for a PLSDA model.

Usage

plsda_vip_plot(threshold = 1, level, ...)

Arguments

threshold

(numeric, integer) The threshold for indicating significant features. The default is 1.

level

(character) The factor level (group) to plot.

...

Additional slots and values passed to struct_class.

Details

This object makes use of functionality from the following packages:

Value

A plsda_vip_plot object. This object has no output slots. See chart_plot in the struct package to plot this chart object.

References

Liland K, Mevik B, Wehrens R (2021). pls: Partial Least Squares and Principal Component Regression. R package version 2.8-0, https://CRAN.R-project.org/package=pls.

Wickham H (2016). ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York. ISBN 978-3-319-24277-4, https://ggplot2.tidyverse.org.

Examples

D = iris_DatasetExperiment()
M = mean_centre()+PLSDA(factor_name='Species')
M = model_apply(M,D)

C = plsda_vip_plot(level='setosa')
chart_plot(C,M[2])

[Package structToolbox version 1.6.0 Index]