mockEmpiricalSet {splatter} | R Documentation |
Quick function to generate matching mock VCF, bulk expression, and eQTL data, useful for running splatPopEmpiricalMeans
mockEmpiricalSet( n.genes = 20, n.snps = 1000, n.samples = 10, chromosome = 1, chr.length = 2e+06, seed = NULL )
n.genes |
Number of genes in mock eQTL data. |
n.snps |
Number of SNPs in mock vcf file. |
n.samples |
Number of samples in mock bulk data. |
chromosome |
Chromosome name |
chr.length |
Length of mock chromosome |
seed |
Optional: seed for random seed |
list(gff=mockGFF, vcf=mockVCF, means=mockMEANS, eqtl=mockEQTL)
empirical <- mockEmpiricalSet()