kersplatSimulate {splatter} | R Documentation |
Simulate scRNA-seq count data using the Kersplat model
kersplatSimulate( params = newKersplatParams(), sparsify = TRUE, verbose = TRUE, ... )
params |
KersplatParams object containing simulation parameters. |
sparsify |
logical. Whether to automatically convert assays to sparse matrices if there will be a size reduction. |
verbose |
logical. Whether to print progress messages |
... |
any additional parameter settings to override what is provided in
|
This functions is for simulating data in a single step. It consists of a
call to kersplatSetup
followed by a call to
kersplatSample
. Please see the documentation for those
functions for more details of the individual steps.
SingleCellExperiment containing simulated counts and intermediate values
if (requireNamespace("igraph", quietly = TRUE)) { sim <- kersplatSimulate }