kersplatEstimate {splatter} | R Documentation |
Estimate simulation parameters for the Kersplat simulation from a real dataset. See the individual estimation functions for more details on how this is done.
kersplatEstimate(counts, params = newKersplatParams(), verbose = TRUE) ## S3 method for class 'SingleCellExperiment' kersplatEstimate(counts, params = newKersplatParams(), verbose = TRUE) ## S3 method for class 'matrix' kersplatEstimate(counts, params = newKersplatParams(), verbose = TRUE)
counts |
either a counts matrix or a SingleCellExperiment object containing count data to estimate parameters from. |
params |
KersplatParams object to store estimated values in. |
verbose |
logical. Whether to print progress messages. |
KersplatParams object containing the estimated parameters.
kersplatEstMean
, kersplatEstBCV
,
kersplatEstLib
if (requireNamespace("igraph", quietly = TRUE)) { # Load example data library(scater) set.seed(1) sce <- mockSCE() params <- kersplatEstimate(sce) params }