parse_spike_UMI {spiky}R Documentation

parse out the forward and reverse UMIs and contig for a BED/BAM

Description

parse out the forward and reverse UMIs and contig for a BED/BAM

Usage

parse_spike_UMI(UMI, pos = NULL, seqs = NULL)

Arguments

UMI

a vector of UMIs

pos

optional vector of positions (else all are set to 1)

seqs

optional vector of read sequences (else widths default to 96)

Value

a GRanges


[Package spiky version 0.99.999 Index]