compare_motif_pairs {spatzie} | R Documentation |
Compute the log-likelihood ratio that a motif pair is differential between two interaction datasets. Note that motif pair significance should have been computed using the same method for both datasets.
compare_motif_pairs( interaction_data1, interaction_data2, differential_p = 0.05 )
interaction_data1 |
an interactionData object of paired genomic regions that has been scanned for significant motif:motif interactions |
interaction_data2 |
an interactionData object of paired genomic regions that has been scanned for significant motif:motif interactions |
differential_p |
threshold for significance of differential p-value |
a matrix of the log likelihood ratio of motif pairs that are significantly differential between two interactionData sets
Jennifer Hammelman
pheatmap::pheatmap(compare_motif_pairs(spatzie::int_data_k562, spatzie::int_data_mslcl, 5e-06), fontsize = 6)