renameCollections {sparrow} | R Documentation |
This function remaps names of collections in the database from their current names to ones specified by the user.
renameCollections(x, rename = NULL, ...)
x |
A GeneSetDb object |
rename |
a named character vector. |
... |
pass it along |
GeneSetDb x
with renamed geneSets(x)$collection
values.
gdb <- exampleGeneSetDb() ngdb <- renameCollections(gdb, c("c2" = "MSigDB C2", "c7" = "ImmuneSigDb")) all.equal( unname(geneSetURL(gdb, "c7", "GSE3982_BCELL_VS_TH2_DN")), unname(geneSetURL(ngdb, "ImmuneSigDb", "GSE3982_BCELL_VS_TH2_DN")))