getReactomeCollection {sparrow} | R Documentation |
Retrieve gene set collections from from reactome.db
getReactomeCollection( species = "human", id.type = c("entrez", "ensembl"), rm.species.prefix = TRUE ) getReactomeGeneSetDb( species = "human", id.type = c("entrez", "ensembl"), rm.species.prefix = TRUE )
species |
the species to get pathay information for |
id.type |
|
rm.species.prefix |
pathways are provided with species prefixes from
|
a reactome BiocSet object
getReactomeGeneSetDb
: returns a GeneSetDb object
bsc.h <- getReactomeCollection("human") gdb.h <- getReactomeGeneSetDb("human")