slingParams {slingshot}R Documentation

Methods for parameters used by Slingshot

Description

Extracts additional control parameters used by Slingshot in lineage inference and fitting simultaneous principal curves.

Usage

slingParams(x)

## S4 method for signature 'PseudotimeOrdering'
slingParams(x)

## S4 method for signature 'SingleCellExperiment'
slingParams(x)

## S4 method for signature 'SlingshotDataSet'
slingParams(x)

Arguments

x

an object containing slingshot output.

Value

The list of additional parameters used by Slingshot. These include parameters related to the cluster-based minimum spanning tree:

They may also specify how simultaneous principal curves were constructed (for a complete listing, see getCurves:

Examples

data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
pto <- slingshot(rd, cl, start.clus = '1')
slingParams(pto)

[Package slingshot version 2.1.1 Index]