seuratSCTransform {singleCellTK} | R Documentation |
seuratSCTransform Runs the SCTransform function to transform/normalize the input data
seuratSCTransform( inSCE, normAssayName = "SCTCounts", useAssay = "counts", verbose = TRUE )
inSCE |
Input SingleCellExperiment object |
normAssayName |
Name for the output data assay. Default
|
useAssay |
Name for the input data assay. Default |
verbose |
Logical value indicating if informative messages should
be displayed. Default is |
Updated SingleCellExperiment object containing the transformed data
data("mouseBrainSubsetSCE", package = "singleCellTK") mouseBrainSubsetSCE <- seuratSCTransform(mouseBrainSubsetSCE)