.seuratInvalidate {singleCellTK} | R Documentation |
.seuratInvalidate Removes seurat data from the input SingleCellExperiment object specified by the task in the Seurat workflow.
.seuratInvalidate( inSCE, scaleData = TRUE, varFeatures = TRUE, PCA = TRUE, ICA = TRUE, tSNE = TRUE, UMAP = TRUE, clusters = TRUE )
inSCE |
Input |
scaleData |
Remove scaled data from seurat. Default |
varFeatures |
Remove variable features from seurat. Default |
PCA |
Remove PCA from seurat. Default |
ICA |
Remove ICA from seurat. Default |
tSNE |
Remove tSNE from seurat. Default |
UMAP |
Remove UMAP from seurat. Default |
clusters |
Remove clusters from seurat. Default |
Updated SingleCellExperiment object containing the Seurat object in the metadata slot with the data removed