runSeurat {singleCellTK}R Documentation

A wrapper function run complete Seurat workflow.

Description

A wrapper function run complete Seurat workflow.

Usage

runSeurat(inSCE, useAssay)

Arguments

inSCE

Input SingleCellExperiment object.

useAssay

Specify the assay to use with Seurat workflow.

Value

SingleCellExperiment with results from Seurat workflow stored.

Examples

data(sce_chcl, package = "scds")
sce_chcl <- runSeurat(inSCE = sce_chcl, useAssay = "counts")

[Package singleCellTK version 2.3.1 Index]