mergeSCEColData {singleCellTK} | R Documentation |
Merges colData of the singleCellExperiment objects obtained from the same dataset which contain differing colData. (i.e. raw data and filtered data)
mergeSCEColData(inSCE1, inSCE2, id1 = "column_name", id2 = "column_name")
inSCE1 |
Input SingleCellExperiment object. The function will output this singleCellExperiment object with a combined colData from inSCE1 and inSCE2. |
inSCE2 |
Input SingleCellExperiment object. colData from this object will be merged with colData from inSCE1 and loaded into inSCE1. |
id1 |
Character vector. Column in colData of inSCE1 that will be used to combine inSCE1 and inSCE2. Default "column_name" |
id2 |
Character vector. Column in colData of inSCE2 that will be used to combine inSCE1 and inSCE2. Default "column_name" |
SingleCellExperiment object containing combined colData from both singleCellExperiment for samples in inSCE1.
sce1 <- importCellRanger( cellRangerDirs = system.file("extdata/", package = "singleCellTK"), sampleDirs = "hgmm_1k_v3_20x20", sampleNames = "hgmm1kv3", dataType = "filtered") data(scExample) sce2 <- sce sce <- mergeSCEColData(inSCE1 = sce1, inSCE2 = sce2, id1 = "column_name", id2 = "column_name")