.ggDensity {singleCellTK} | R Documentation |
Visualizes values stored in the specified slot of a SingleCellExperiment object via a density plot.
.ggDensity( value, groupBy = NULL, xlab = NULL, ylab = NULL, baseSize = 12, axisSize = NULL, axisLabelSize = NULL, defaultTheme = TRUE, title = NULL, titleSize = NULL, combinePlot = "none", cutoff = NULL )
value |
Numeric value that will be plotted via density plot. |
groupBy |
Groupings for each numeric value. A user may input a vector equal length to the number of the samples in the SingleCellExperiment object, or can be retrieved from the colData slot. Default NULL. |
xlab |
Character vector. Label for x-axis. Default NULL. |
ylab |
Character vector. Label for y-axis. Default NULL. |
baseSize |
The base font size for all text. Default 12. Can be overwritten by titleSize, axisSize, and axisLabelSize. |
axisSize |
Size of x/y-axis ticks. Default NULL. |
axisLabelSize |
Size of x/y-axis labels. Default NULL. |
defaultTheme |
Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE. |
title |
Title of plot. Default NULL. |
titleSize |
Size of title of plot. Default 15. |
combinePlot |
Must be either "all", "sample", or "none". "all" will combine all plots into a single .ggplot object, while "sample" will output a list of plots separated by sample. Default "none". |
cutoff |
Numeric value. The plot will be annotated with a vertical line if set. Default NULL. |
density plot, in .ggplot.