plotBarcodeRankDropsResults {singleCellTK} | R Documentation |
A wrapper function which visualizes outputs from the runEmptyDrops function stored in the colData slot of the SingleCellExperiment object via plots.
plotBarcodeRankDropsResults( inSCE, sample = NULL, defaultTheme = TRUE, dotSize = 0.5, titleSize = 18, axisLabelSize = 18, axisSize = 15, legendSize = 15 )
inSCE |
Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required. |
sample |
Character vector. Indicates which sample each cell belongs to. Default NULL. |
defaultTheme |
Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE. |
dotSize |
Size of dots. Default 0.5. |
titleSize |
Size of title of plot. Default 18. |
axisLabelSize |
Size of x/y-axis labels. Default 18. |
axisSize |
Size of x/y-axis ticks. Default 15. |
legendSize |
size of legend. Default 15. |
list of .ggplot objects
data(scExample, package="singleCellTK") sce <- runBarcodeRankDrops(inSCE=sce) plotBarcodeRankDropsResults(inSCE=sce)