plotDimRed {singleCellTK} | R Documentation |
Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP
plotDimRed( inSCE, useReduction, showLegend = FALSE, xDim = 1, yDim = 2, xAxisLabel = NULL, yAxisLabel = NULL )
inSCE |
Input SCE object |
useReduction |
Reduction to plot |
showLegend |
If legends should be plotted or not |
xDim |
Numeric value indicating the dimension to use for X-axis. Default is 1 (refers to PC1). |
yDim |
Numeric value indicating the dimension to use for Y-axis. Default is 2 (refers to PC2). |
xAxisLabel |
Specify the label for x-axis. Default is |
yAxisLabel |
Specify the label for y-axis. Default is |
plot object
data("mouseBrainSubsetSCE", package = "singleCellTK") plotDimRed(mouseBrainSubsetSCE, "PCA_logcounts")