plotTopHVG {singleCellTK} | R Documentation |
Plot highly variable genes
plotTopHVG( inSCE, method = c("vst", "mean.var.plot", "dispersion", "modelGeneVar"), hvgList = NULL, n = NULL, labelsCount = NULL )
inSCE |
Input |
method |
Select either "vst", "mean.var.plot", "dispersion" or "modelGeneVar". |
hvgList |
Character vector indicating the labels of highly variable genes. |
n |
Specify the number of top genes to highlight in red. If
|
labelsCount |
Specify the number of data points/genes to label. By default, all top genes will be labeled. |
plot object
data("mouseBrainSubsetSCE", package = "singleCellTK") mouseBrainSubsetSCE <- scranModelGeneVar(mouseBrainSubsetSCE, "logcounts") plotTopHVG(mouseBrainSubsetSCE, method = "modelGeneVar", n = 1000, labelsCount = 0)