anno_word_cloud_from_GO {simplifyEnrichment}R Documentation

Word cloud annotations from GO

Description

Word cloud annotations from GO

Usage

anno_word_cloud_from_GO(align_to, go_id, term = NULL, exclude_words = NULL, ...)

Arguments

align_to

The same format as in anno_word_cloud.

go_id

The value should be in the same format as align_to. If go_id is a vector, it should have the same length as align_to, and if go_id is a list, note, e.g. length(go_id[[1]]) is not necessarily equal to length(align_to[[1]]. If align_to is a categorical vector and go_id is a list, names of go_id should have overlap to the levels in align_to.

term

Alternatively the GO description can be set via the term argument. The same format as in anno_word_cloud.

exclude_words

The words excluced for construcing word cloud. Some words are internally exclucded: c("via", "protein", "factor", "side", "type", "specific").

...

All other arguments passed to anno_word_cloud.

Examples

# There is no example
NULL


[Package simplifyEnrichment version 1.3.0 Index]