mabsGO {signatureSearch} | R Documentation |
MeanAbs enrichment analysis with GO terms.
mabsGO( geneList, ont = "BP", OrgDb, keyType = "SYMBOL", nPerm = 1000, minGSSize = 5, maxGSSize = 500, pvalueCutoff = 0.05, pAdjustMethod = "BH" )
geneList |
named numeric vector with gene SYMBOLs in the name slot decreasingly ranked by scores in the data slot. |
ont |
one of "BP", "MF", "CC" or "ALL" |
OrgDb |
OrgDb |
keyType |
keytype of gene |
nPerm |
permutation numbers |
minGSSize |
integer, minimum size of each gene set in annotation system |
maxGSSize |
integer, maximum size of each gene set in annotation system |
pvalueCutoff |
pvalue cutoff |
pAdjustMethod |
pvalue adjustment method |
feaResult
object
Yuzhu Duan
data(targetList) #mg <- mabsGO(geneList=targetList, ont="MF", OrgDb="org.Hs.eg.db", # pvalueCutoff=1) #head(mg)