sesamePlotIntensVsBetas {sesame}R Documentation

Plot Total Signal Intensities vs Beta Values This plot is helpful in revealing the extent of signal background and dye bias.

Description

Plot Total Signal Intensities vs Beta Values This plot is helpful in revealing the extent of signal background and dye bias.

Usage

sesamePlotIntensVsBetas(sdf, mask = TRUE, intens.range = c(5, 15), ...)

Arguments

sdf

a SigDF

mask

whether to remove probes that are masked

intens.range

plot range of signal intensity

...

additional arguments to smoothScatter

Value

create a total signal intensity vs beta value plot

Examples

sesameDataCache("EPIC")
sdf <- # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
sesamePlotIntensVsBetas(sdf)

[Package sesame version 1.12.8 Index]