inferSexKaryotypes {sesame}R Documentation

Infer Sex Karyotype

Description

The function takes a SigDF and infers the sex chromosome Karyotype and presence/absence of X-chromosome inactivation (XCI). chrX, chrY and XCI are inferred relatively independently. This function gives a more detailed look of potential sex chromosome aberrations.

Usage

inferSexKaryotypes(sdf)

Arguments

sdf

a SigDF

Value

Karyotype string, with XCI

Examples

sesameDataCache("EPIC") # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
inferSexKaryotypes(sdf)

[Package sesame version 1.12.8 Index]