compareDatbaseSetOverlap {sesame} | R Documentation |
compareDatbaseSetOverlap calculates the pariwise overlap between given list of database sets using a distance metric.
compareDatbaseSetOverlap( databaseSets = NA, metric = "Jaccard", verbose = FALSE )
databaseSets |
List of vectors corresponding to the database sets of interest with associated meta data as an attribute to each element. Optional. (Default: NA) |
metric |
String representing the similarity metric to use. Optional. (Default: "Jaccard"). |
verbose |
Logical value indicating whether to display intermediate text output about the type of test. Optional. (Default: FALSE) |
An upper triangular matrix containing a metric (Jaccard) comparing the pairwise distances between database sets.
databaseSetNames = c('KYCG.MM285.seqContextN.20210630') databaseSets = do.call(c, lapply(databaseSetNames, sesameDataGet)) compareDatbaseSetOverlap(databaseSets)