inferStrain {sesame}R Documentation

Infer strain information for mouse array

Description

Infer strain information for mouse array

Usage

inferStrain(betas, strain_snp_table = NULL)

Arguments

betas

beta value vector from which VAFs are extracted

strain_snp_table

if not given download the default from sesameData

Value

a list of best guess, p-value of the best guess and the probabilities of all strains

Examples

sesameDataCache("MM285") # if not done yet
sdf = sesameDataGet('MM285.1.SigDF')
betas = getBetas(dyeBiasNL(noob(sdf)))
inferStrain(betas)

[Package sesame version 1.12.7 Index]