getProbesByRegion {sesame}R Documentation

Get probes by genomic region

Description

The function takes a genomic coordinate and output the a vector of probes on the specified platform that falls in the given genomic region.

Usage

getProbesByRegion(
  chrm,
  beg = 1,
  end = -1,
  platform = c("EPIC", "HM450"),
  refversion = c("hg38", "hg19")
)

Arguments

chrm

chromosome

beg

begin, 1 if omitted

end

end, chromosome end if omitted

platform

EPIC or HM450

refversion

hg38 or hg19

Value

probes that fall into the given region

Examples

getProbesByRegion('chr5', 135413937, 135419936,
    refversion = 'hg19', platform = 'HM450')

[Package sesame version 1.12.6 Index]