probeSuccessRate {sesame}R Documentation

Whole-dataset-wide Probe Success Rate

Description

This function calculates the probe success rate using pOOBAH detection p-values. Probes that has a detection p-value higher than a specific threshold are considered failed probes.

Usage

probeSuccessRate(sdf, mask = TRUE, max_pval = 0.05)

Arguments

sdf

a SigDF

mask

whether or not we count the masked probes in SigDF

max_pval

the maximum p-value to consider detection success

Value

a fraction number as probe success rate

Examples

sesameDataCache("EPIC") # if not done yet
sdf = sesameDataGet('EPIC.1.SigDF')
probeSuccessRate(sdf)

[Package sesame version 1.12.5 Index]