testEnrichment1 {sesame} | R Documentation |
testEnrichment1 tests for the enrichment of set of probes (query set) in a single given feature (database set)
testEnrichment1( querySet, databaseSet, universeSet, estimate.type = "ES", p.value.adj = FALSE, verbose = FALSE )
querySet |
Vector of probes of interest (e.g., significant probes) |
databaseSet |
Vector corresponding to the database sets of interest with associated meta data as an attribute to each element. |
universeSet |
Vector of probes in the universe set containing all of the probes to be considered in the test. |
estimate.type |
String indicating the estimate to report. (Default: "ES") |
p.value.adj |
Logical value indicating whether to report the adjusted p-value. (Default: FALSE) |
verbose |
Logical value indicating whether to display intermediate text output about the type of test. Optional. (Default: FALSE) |
One list containing features corresponding the test estimate, p-value, and type of test.