testEnrichment1 {sesame}R Documentation

testEnrichment1 tests for the enrichment of set of probes (query set) in a single given feature (database set)

Description

testEnrichment1 tests for the enrichment of set of probes (query set) in a single given feature (database set)

Usage

testEnrichment1(
  querySet,
  databaseSet,
  universeSet,
  estimate.type = "ES",
  p.value.adj = FALSE,
  verbose = FALSE
)

Arguments

querySet

Vector of probes of interest (e.g., significant probes)

databaseSet

Vector corresponding to the database sets of interest with associated meta data as an attribute to each element.

universeSet

Vector of probes in the universe set containing all of the probes to be considered in the test.

estimate.type

String indicating the estimate to report. (Default: "ES")

p.value.adj

Logical value indicating whether to report the adjusted p-value. (Default: FALSE)

verbose

Logical value indicating whether to display intermediate text output about the type of test. Optional. (Default: FALSE)

Value

One list containing features corresponding the test estimate, p-value, and type of test.


[Package sesame version 1.12.5 Index]