probeSuccessRate {sesame} | R Documentation |
This function calculates the probe success rate using pOOBAH detection p-values. Probes that has a detection p-value higher than a specific threshold are considered failed probes.
probeSuccessRate(sdf, mask = TRUE, max_pval = 0.05)
sdf |
a |
mask |
whether or not we count the masked probes in SigDF |
max_pval |
the maximum p-value to consider detection success |
a fraction number as probe success rate
sesameDataCache("EPIC") # if not done yet sdf = sesameDataGet('EPIC.1.SigDF') probeSuccessRate(sdf)