testEnrichmentFGSEA {sesame}R Documentation

testEnrichmentFGSEA uses the FGSEA test to estimate the association of a categorical variable against a continuous variable.

Description

testEnrichmentFGSEA uses the FGSEA test to estimate the association of a categorical variable against a continuous variable.

Usage

testEnrichmentFGSEA(
  querySet,
  databaseSet,
  p.value.adj = FALSE,
  estimate.type = "ES"
)

Arguments

querySet

Vector of probes of interest (e.g., significant probes)

databaseSet

Vector of probes corresponding to a single database set of interest.

p.value.adj

Logical value indicating whether to report the adjusted p-value. (Default: FALSE).

estimate.type

String indicating the estimate to report. Optional. (Default: "ES").

Value

A DataFrame with the estimate/statistic, p-value, and name of test for the given results.


[Package sesame version 1.11.14 Index]