getDatabaseSets {sesame}R Documentation

getDatabaseSets retrieves database sets from a meta data sheet by querying the group, platform, reference columns. The data is returned as a list where names correspond to chosen database sets.

Description

getDatabaseSets retrieves database sets from a meta data sheet by querying the group, platform, reference columns. The data is returned as a list where names correspond to chosen database sets.

Usage

getDatabaseSets(
  titles = NA,
  group = NA,
  platform = NA,
  reference = NA,
  verbose = TRUE
)

Arguments

titles

vector containing the characters associated with the selected database sets; only non-NA locations will be returned. Optional. (Default: c("20210810_MM285_TFBS_ENCODE").

group

string representing the group for which the database sets will be returned. Optional. (Default: NA).

platform

string representing the platform (EPIC, HM450, HM27, MM285) for which database sets will be returned. Optional. (Default: NA).

reference

string representing the reference (hg19, hg38, mm9, mm10) for which the database sets will be returned. Optional. (Default NA).

verbose

Logical value indicating whether intermediate outputs will be displayed to console. Optional. (Default: TRUE).

Value

One list of vectors corresponding to aggregated database sets.

Examples

databaseSetNames = c('KYCG.MM285.seqContextN.20210630', 
'KYCG.MM285.designGroup.20210210')
databaseSets = getDatabaseSets(databaseSetNames, verbose=FALSE)


[Package sesame version 1.11.14 Index]