harmonize_seqlengths {seqsetvis} | R Documentation |
ensures compatibility between seqlength of gr and bam_file based on header
harmonize_seqlengths(gr, bam_file)
gr |
GRanges, object to harmonize seqlengths for |
bam_file |
character, a path to a valid bam file |
gr with seqlengths matching bam_file
library(GenomicRanges) gr = GRanges("chr1", IRanges(1, 100)) #seqlengths has not been set seqlengths(gr) bam = system.file("extdata/test.bam", package = "seqsetvis") gr2 = harmonize_seqlengths(gr, bam) #seqlengths now set seqlengths(gr2)