easyLoad_bed {seqsetvis} | R Documentation |
Mainly a utility function for loading MACS2 narrowPeak and broadPeak.
easyLoad_bed( file_paths, file_names = NULL, extraCols = character(), n_cores = getOption("mc.cores", 1) )
file_paths |
character vector of paths to narrowPeak files. If named, those names will be used in output unless overriden by providing file_names. |
file_names |
character vector of names for output list. If not NULL will override any existing names for file_paths. Default is NULL. |
extraCols |
named character vector of classes. passed to rtracklayer::import for format = "BED". default is character(). |
n_cores |
number of cores to use, uses mc.cores option if set or 1. |
a named list of GRanges loaded from file_paths
bed_f = system.file("extdata/test_loading.bed", package = "seqsetvis", mustWork = TRUE) easyLoad_bed(bed_f, "my_bed")