seqdiff {seqcombo}R Documentation

seqdiff

Description

calculate difference of two aligned sequences

Usage

seqdiff(fasta, reference = 1)

Arguments

fasta

fasta file

reference

which sequence serve as reference, 1 or 2

Value

SeqDiff object

Author(s)

guangchuang yu

Examples

fas <- list.files(system.file("examples","GVariation", package="seqcombo"), pattern="fas", full.names=TRUE)
seqdiff(fas[1], reference=1)

[Package seqcombo version 1.16.0 Index]