range_counts {segmenter} | R Documentation |
Format the loaded counts data
Description
The function takes the data.frame
s of the loaded counts data and
format them into GRanges
or SummarizedExperiment
objects.
Usage
range_counts(
counts,
features,
return = "GRanges",
tidy = FALSE,
average = FALSE,
marks
)
Arguments
counts |
A matrix of the read_bam_file output.
|
features |
A GRanges . That was used to count the bam files.
|
return |
A string. Possible values are GRanges (default) or
SummarizedExperiment .
|
tidy |
A logical . Default is TRUE . Whether to tidy the
metadata columns of the GRanges object.
|
average |
A logical . Default is FALSE . Whether to average
the counts by marks before building the object.
|
marks |
A character vector. The length shoud equal the numbe of
columns in counts and is used for averaging and renaming the matrix
columns.
|
Value
GRanges
(default) or SummarizedExperiment
.
[Package
segmenter version 0.99.14
Index]