.LearnModel {segmenter}R Documentation

Call Java LearnModel

Description

Call the Java module LearnModel which learns a multi-state model from ChIP-seq data.

Usage

.LearnModel(
  inputdir,
  outputdir,
  numstates,
  coordsdir,
  anchorsdir,
  chromsizefile,
  assembly,
  optional
)

Arguments

inputdir

A string. The path to binarized files.

outputdir

A string. The path to a directory where output will be written.

numstates

An integer. The number of desired states in the model.

coordsdir

A string. The path to genomic coordiantes files.

anchorsdir

A string. The path to the genomic anchors files.

chromsizefile

A string. The path to the chromosomes sizes file.

assembly

A string. The name of the genomic assembely.

optional

A string. Other optional arguments passed to the Java command.

Value

NULL. Output files are written to the output directory.

See Also

learn_model


[Package segmenter version 0.99.14 Index]