.LearnModel {segmenter} | R Documentation |
LearnModel
Call the Java module LearnModel
which learns a multi-state model
from ChIP-seq data.
.LearnModel( inputdir, outputdir, numstates, coordsdir, anchorsdir, chromsizefile, assembly, optional )
inputdir |
A string. The path to binarized files. |
outputdir |
A string. The path to a directory where output will be written. |
numstates |
An integer. The number of desired states in the model. |
coordsdir |
A string. The path to genomic coordiantes files. |
anchorsdir |
A string. The path to the genomic anchors files. |
chromsizefile |
A string. The path to the chromosomes sizes file. |
assembly |
A string. The name of the genomic assembely. |
optional |
A string. Other optional arguments passed to the Java command. |
NULL
. Output files are written to the output directory.
learn_model