accessors {segmenter} | R Documentation |
segmentation
objectsThese functions can be used to access the contents of segmentation
objects as well as modifying them.
model(object) ## S4 method for signature 'segmentation' model(object) emission(object) ## S4 method for signature 'segmentation' emission(object) transition(object) ## S4 method for signature 'segmentation' transition(object) overlap(object, ...) ## S4 method for signature 'segmentation' overlap(object, cell) TSS(object, ...) ## S4 method for signature 'segmentation' TSS(object, cell) TES(object, ...) ## S4 method for signature 'segmentation' TES(object, cell) segment(object, ...) ## S4 method for signature 'segmentation' segment(object, cell) bins(object, ...) ## S4 method for signature 'segmentation' bins(object, cell) counts(object, ...) ## S4 method for signature 'segmentation' counts(object, cell) likelihood(object) ## S4 method for signature 'segmentation' likelihood(object) cells(object) ## S4 method for signature 'segmentation' cells(object) states(object) ## S4 method for signature 'segmentation' states(object) markers(object) ## S4 method for signature 'segmentation' markers(object)
object |
An object of class |
... |
Other argument passed to the accessors |
cell |
A string |
The data in the corresponding slot or a subset of it.
segmentation
model(test_obj) emission(test_obj) transition(test_obj) overlap(test_obj) overlap(test_obj, cell = 'K562') TSS(test_obj) TSS(test_obj, cell = 'K562') TES(test_obj) TES(test_obj, cell = 'K562') segment(test_obj) segment(test_obj, cell = 'K562') bins(test_obj) counts(test_obj) likelihood(test_obj) cells(test_obj) states(test_obj) markers(test_obj)