count_reads_ranges {segmenter}R Documentation

Count reads in GRanges objects from bam files

Description

Count reads in GRanges objects from bam files

Usage

count_reads_ranges(ranges, cellmarkfiletable, inputbamdir)

Arguments

ranges

A GRanges to count in.

cellmarkfiletable

A string. The path to the input files table.

inputbamdir

A string. The path to the input bam files directory.

Value

A SummarizedExperiment object with ranges as its rowRanges and the counts as the assay.


[Package segmenter version 0.99.14 Index]