binarize_bed {segmenter}R Documentation

Binarize the bed files

Description

Transform the aligned reads into a binary format.

Usage

binarize_bed(
  inputdir,
  cellmarkfiletable,
  chromsizefile,
  binsize = 200,
  outputdir
)

Arguments

inputdir

A string. The dirctory of the bam files.

cellmarkfiletable

A string. The path to the input files table. Only

chromsizefile

A string. The path to the chromosomes sizes file.

binsize

An integer. The number in bp used to generate binarized files.

outputdir

A string. The path to a directory where output will be written.

Value

NULL. Write files to the outputdir

See Also

Binarize binarize_bam


[Package segmenter version 0.99.14 Index]