get_scores {scone} | R Documentation |
Extract scone scores
get_scores(x) get_score_ranks(x) ## S4 method for signature 'SconeExperiment' get_scores(x) ## S4 method for signature 'SconeExperiment' get_score_ranks(x)
x |
an object of class |
get_scores
returns a matrix with all (non-missing) scone
scores, ordered by average score rank.
get_score_ranks
returns a vector of average score ranks.
set.seed(42) mat <- matrix(rpois(500, lambda = 5), ncol=10) colnames(mat) <- paste("X", 1:ncol(mat), sep="") obj <- SconeExperiment(mat) res <- scone(obj, scaling=list(none=identity, uq=UQ_FN), evaluate=TRUE, k_ruv=0, k_qc=0, eval_kclust=2, bpparam = BiocParallel::SerialParam()) scores = get_scores(res) score_ranks = get_score_ranks(res)