clean.gos {scde} | R Documentation |
Filter GOs list and append GO names when appropriate
clean.gos(go.env, min.size = 5, max.size = 5000, annot = FALSE)
go.env |
GO or gene set list |
min.size |
Minimum size for number of genes in a gene set (default: 5) |
max.size |
Maximum size for number of genes in a gene set (default: 5000) |
annot |
Whether to append GO annotations for easier interpretation (default: FALSE) |
a filtered GO list
# 10 sample GOs library(org.Hs.eg.db) go.env <- mget(ls(org.Hs.egGO2ALLEGS)[1:10], org.Hs.egGO2ALLEGS) # Filter this list and append names for easier interpretation go.env <- clean.gos(go.env)