getTranscriptSequence {scanMiRApp} | R Documentation |
Utility wrapper to extracts the sequence of a given transcript (UTR or CDS+UTR).
getTranscriptSequence( tx = NULL, annotation, annoFilter = NULL, extract = c("UTRonly", "withORF", "exons"), ... )
tx |
The ensembl ID of the transcript(s) |
annotation |
A |
annoFilter |
An optional 'AnnotationFilter' or 'AnnotationFilterList' to further filter the set of transcripts to be extracted |
extract |
Which parts of the transcripts to extract. For 'UTRonly' (default) only the 3' UTR regions are extracted, 'withORF' additionally extracts the coding regions, and 'exons' extracts all exons |
... |
Passed to |
A DNAStringSet
.
anno <- ScanMiRAnno("fake") seq <- getTranscriptSequence( tx="ENSTFAKE0000056456", annotation=anno )